CARACTERISTICA GENOMULUI LA OROBANCHACEAE

Maria DUCA, Angela PORT, Steliana CLAPCO, Adriana ACCIU

Abstract


În prezenta lucrare au fost analizate în plan comparativ cercetările expuse atât în publicaţii ştiinţifice, cât şi în trei proiecte din bazele de date publice: Angiosperm Phylogeny Website, versiunea 13, Parasitic Plant Connection şi Parasitic Plant Genome Project, fiind trasate anumite dependenţe corelative dintre gradul de parazitism şi tendinţele evoluţiei genomului. S-a concluzionat că numărul de cromozomi, prezenţa unor introni, deleţia unor regiuni din genomul plastidic furnizează informaţii utile în studiul mecanismelor evoluţiei genomului, apartenenţei taxonomice specifice etc.

CARACTERISTICS OF THE GENOME OF OROBANCHACEAE

The researches both from the scientific publications and three projects included in public databases: Angiosperm Phylogeny Website, version 13, Parasitic Plant Connection, Parasitic Plant Genome Project have been analysed and some correlation between degree of parasitism and genome evolution of Orobancheae have been highlighted. It has been concluded that number of chromosomes, presence of introns, deletion of some regions of plastid genome, provides useful information for studying of genome evolution mechanisms, specific taxonomic affiliations etc.


Keywords


Orobancheae, parasitism, evolution, genome, plastome, condriome, gene transfer.

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DIE, J.V., DITA, M.A., KRAJINSKI, F., GONZALEZ-VERDEJO, C.I., RUBIALES, D., MORENO, M.T. and ROMAN, B. Identification by suppression subtractive hybridization and expression analysis of Medicago truncatula putative defence genes in response to Orobanche crenata parasitization. In: Physiological and Molecular Plant Pathology, 2007, no.70, p.49-59, ISSN 0885-5765

LIANG, L.Z., LIU, Y., JARIWALA, J., LYNN, D.G. and PALMER, A.G. Detection and Adaptation in Parasitic Angiosperm Host Selection. In: American Journal of Plant Sciences, 2016, no.7, p.1275-1290, ISSN 2158-2750

WESTWOOD, J., DEPAMPHILIS, C., DAS, M., FERNANDEZ-APARICIO, M., HONAAS, L., TIMKO, M., WAFULA, E., WICKETT, N., YODER, J. The Parasitic Plant Genome Project: New Tools for Understanding the Biology of Orobanche and Striga. In: Weed Science, 2012, vol.60, p.295-306, ISSN 1550-2759

BENNETT, J., MATHEWS, S. Phylogeny of the parasitic plant family Orobanchaceae inferred from phytochrome A. In: American Journal of Botany. 2006, no.93(7), p.1039-1051. ISSN 0002-9122

SCHNEEWEISS, G.M, PALOMEQUE, T., COLWELL, A.E., WEISS-SCHNEEWEISS, H. Chromosome numbers and karyotype evolution in holoparasitic Orobanche (Orobanchaceae) and related genera. In: American Journal of Botany, 2004, no.91, p.439-448, ISSN 0002-9122

WEISS-SCHNEEWEISS, H., GREILHUBER, J., SCHNEEWEISS, G. Genome size evolution in holoparasitic Orobanche (Orobanchaceae) and related genera. In: American Journal of Botany, 2006, no.93(7), p.148-156.

ISSN 0002-9122

KADEREIT, J. Flowering Plants – Dicotyledons: Lamiales. Springer Publishing House, 2004, p.477.

ISBN 978-3-642-62200-7

PIEDNOËL, M., SOUSA, A., RENNER, S. Transposable elements in a clade of three tetraploids and a diploid relative, focusing on Gypsy amplification, In: Mobile DNA, 2015, DOI 10.1186/s13100-015-0034-8

BEARDSLEY, P.M., SCHOENIG, S.E., WHITTALL, J.B., OLMSTEAD, R.G. Patterns of evolution in western North American Mimulus (Phrymaceae), 2004. In: American Journal of Botany, 2004, no.91, p.474-489.

ISSN 0002-9122

BARKER, W., KIEHN, M., VITEK, E. Chromosome numbers in Australian Euphrasia (Scrophulariaceae). In: Plant Systematics and Evolution Journal, 1988, no.158, p.161-164. ISSN 0378-2697

HECKARD, L.K., CHUANG, T.I. Chromosome numbers, polyploidy, and hybridization in Castilleja (Scrophula-riaceae) of the Great Basin and Rocky Mountains. In: Brittonia, 1977, no.29, p.159-172. ISSN 0007-196X

TANK, D., EGGER, J., OLMSTEAD, R. Phylogenetic classification of subtribe Castillejinae (Orobanchaceae). In: Systematic Botany Journal, 2009, no.34, p.182-197. ISSN 0363-6445

SAMIGULLIN, T., LOGACHEVA, M., PENIN A., VALLEJO-ROMAN, C. Complete Plastid Genome of the Recent Holoparasite Lathraea squamaria Reveals Earliest Stages of Plastome Reduction in Orobanchaceae, In: Plos one, March 2, 2016, DOI.org/10.1371/journal.pone.0150718

TALVE, T., MCGLAUGHLIN, M., HELENURM, K., WALLACE L., OJA, T. Population genetic diversity and species relationships in the genus Rhinanthus L. based on microsatellite markers. In: Plant Biology, 2014, Volume 16, Issue 2, p.495-502. ISSN 1438-8677

ESTEP, M., GOWDA, B., HUANG, K., TIMKO, M., BENNETZEN, J. Genomic Characterization for Parasitic Weedsof the Genus Striga by Sample Sequence Analysis. In: The Plant Genome, 2012, vol.5, no.1, p.30-41.

ISSN 1940-3372

McDONALD, J. Transposable Elements and Evolution. Springer, 1992. 346 p. ISBN 978 94-10-48922

JOHNSON, N., WILSON, G., BOWKER, M., WILSON, J., MILLERD, M. Resource limitation is a driver of local adaptation in mycorrhizal symbioses, In: Proceedings of the National Academy of Sciences of the United States of America Vols., 2010, no.2, 107(5), p.2093-2098, ISSN 0027-8424

LEITCH, A., LEITCH, I. Ecological and genetic factors linked to contrasting genome dynamics in seed plants. In: New Phytologist, 2012, no.194, p.629-646. ISSN 1469-8137

LEITCH, I., BENNETT, M. Genome downsizing in polyploid plants. In: Biological Journal of the Linnean Society, 2004, no.82, p.651-663. ISSN 1095-8312

WICKE, S., SCHNEEWEISS, G., de PAMPHILIS, C., MÜLLER, K., QUANDT, D. The evolution of the plastid chromosome in land plants: gene content, gene order, gene function. In: Plant Molecular Biology, 2011, no.76 (3-5), p.273-297. ISSN 0167-4412

GRUZDEV, E., MARDANOV, A., BELETSKY, A., KOCHIEVA, E., RAVIN, N., SKRYABIN, K. The complete chloroplast genome of parasitic flowering plant Monotropa hypopitys: extensive gene losses and size reduction. In: Mitochondrial DNA. Part B: Resources, 2016, vol.1, no.1, p.212-213. ISSN 2470-1394

ALKATIB, S., FLEISCHMANN, T., SCHARFF, L., BOCK, R. Evolutionary constraints on the plastid tRNA set decoding methionine and isoleucine. In: Nucleic Acids Research, 2012, no.40, p.6713-6724. ISSN 0305-1048

MORDEN, C., WOLFE, K., DEPAMPHILIS, C., PALMER, J. Plastid translation and transcription genes in a nonphotosynthetic plant – Intact, missing and pseudogenes. In: The EMBO Journal, 1991, no.10, p.3281-3288. ISSN 1460-2075

WOLFE, K., MORDEN, C., PALMER, J. Function and evolution of a minimal plastid genome from a nonphoto-synthetic parasitic plant. In: Proceedings of the National Academy of Sciences of the United States of America Vols., 1992, no.89, p.10648-1065. ISSN 0027-8424

WICKE, S., MULLER, K., De PAMPHILIS, C., QUANDT, D., WICKETT, N., ZHANG, Y., RENNER, S., SCHNEEWEISS, G. Mechanisms of functional and physical genome reduction in photosynthetic and nonphoto-synthetic parasitic plants of the broomrape family. In: Plant Cell., 2013, vol.20, no.10, p.3711-3725. ISSN 1531-298X

De PAMPHILIS, C., PALMER, J. Loss of photosynthetic and chlororespiratory genes from the plastid genome of a parasitic flowering plant. In: Nature, 1990, vol.348, p.337-339. ISSN 0028-0836

DELAVAULT, P., RUSSO, N., LUSSON, N., THALOUARN, P. Organization of the reduced plastid genome

of Lathraea clandestina, an achlorophyllous parasitic plant. In: Plant Physiology, 1996, vol.96, p.674-682.

ISSN 0032-0889

LEEBENS-MACK, J., de PAMPHILIS, C. Power analysis of tests for loss of selective constraint in cave crayfish and nonphotosynthetic plant lineages. In: Molecular Biology and Evolution, 2002, no.19, p.1292-1302. ISSN 0737-4038

WOLFE, A., de PAMPHILIS, C. Alternate paths of evolution for the photosynthetic gene rbcL in four nonphoto-synthetic species of Orobanche. In: Plant Molecular Biology, 1997, vol.33, p.965-977. ISSN 1573-5028

WOLFE, K., LI, W.-H., SHARP, P. Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs (plant molecular evolution/molecular clock/mutation rate/organelle DNA/inverted repeat). In: Proceedings of the National Academy of Sciences, 1987, vol.84, p.9054-9058. ISSN 1091-6490

DELAVAULT, P., THALOUARN, P. The obligate root parasite Orobanche cumana exhibits several rbcL sequences. In: Gene, 2002, vol.297, p.85-92. ISSN 1879-0038

WICKE, S. Assessing the Evolutionary Patterns of Plastid Genome Reduction in a Group of Non-Photosynthetic Parasitic Angiosperms (Orobanchaceae). Ph. D. Thesis, Wien University. Wien, 2012. 246 p.

DAVIS, C., XI, Z. Horizontal gene transfer in parasitic plants. In: Current Opinion in Plant Biology, 2015, vol.26, p.14-19. ISSN 1369-5266

KNOOP, V., VOLKMAR, U., HECHT, J., GREWE, F. Mitochondrial genome evolution in the plant lineage. In: Kempten F. (ed). Advances in plant biology – mitochondrial genomes. New York: Springer Science & Business, 2011, p.3-29. ISBN 978-0-387-89780-6

BARKMAN, T., MCNEAL, J., LIM, S-H., COAT, G., CROOM, H., YOUNG, N. Mitochondrial DNA suggests at least 11 origins of parasitism in angiosperms and reveals genomic chimerism in parasitic plants. In: BMC Evolutionary Biology, 2007, no.7, p.1-15. ISSN 1471-2148

FILIPOWICZ, N., RENNER, S. The worldwide holoparasitic Apodanthaceae confidently placed in the Cucurbitales by nuclear and mitochondrial gene trees. In: BMC Evolutionary Biology, 2010, no.10, p.219. ISSN 1471-2148

MOWER, J., STEFANOVIC, S., HAO, W., GUMMOW, J., JAIN, K., AHMED, D., PALMER, J. Horizontal acqui-sition of multiple mitochondrial genes from a parasitic plant followed by gene conversion with host mitochondrial genes. In: BMC Biology, 2010, vol.8, no.150, p.2-16. ISSN 1741-7007

ZHANG, Y. Horizontal gene transfer studies in parasitic plants of the Orobanchaceae. Ph. D. Thesis, The Pennsyl-vania State University, SUA, 2013. 232 p.

WESTWOOD, J., RONEY, J., KHATIBI, P., STROMBERG, V. RNA translocation between parasitic plants and their hosts. In: Pest Management Science, 2009, vol.65(5), p.533-542. ISSN 1526-4998

XI, Z., BRADLEY, R., WURDACK, K., WONG, K., SUGUMARAN, M., BOMBLIES, K., REST, J., DAVIS, C. Horizontal transfer of expressed genes in a parasitic flowering plant. In: BMC Genomics, 2012, no.13, p.227.

ISSN 1471-2164

PARK, J-M., MANEN, J-F., SCHNEEWEISS, G. Horizontal gene transfer of a plastid gene in the non-photosyn-thetic flowering plants Orobanche and Phelipanche (Orobanchaceae). In: Mol. Phyl. Evol., 2007, no.43, p.974-985. ISSN 1055-7903


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